Annotations
- GFF of all Maker annotations
- Transcription Factor Binding Sites identified by FIMO using JASPAR
- GFF file of Genes v3.1
- GTF file of Genes v3.1
- GFF file of REAPR evaluations of v3 of genome
- GFF file of RepeatMasker and RepeatRunner results
- A .genome file for tools like bedtools or IGV
- MD5 checksums of above files
BAC libraries
- Bam file of Mapped reads from BAC Clone MEB1 (Whole Genome) LIBGSS_010749
- Bam file of Mapped reads from Fosmid Clone MEFX (X Chromosome Enriched) LIBGSS_010946
- MD5 checksums of above files
EST libraries
- Mapped EST library from Gravid Uterus LIBEST_027300
- Mapped EST library from Hypothalamus LIBEST_027301
- Mapped EST library from Ovary LIBEST_027302
- Mapped EST library from Testis LIBEST_027303
- Mapped EST library from Mammary LIBEST_021869
- MD5 checksums of above files
Genomic Alignments
- Genome alignment using Mauve of Macropus eugenii v3 vs Monodelphis domesticus v5
- Genome alignment using Mauve of Macropus eugenii v3 vs Homo sapien hg19
- MD5 checksums of above files
Genomic reads used for assembly and REAPR validation
- Bam file for DRR013237 mapped against v3 of genome
- Bam file for DRR013238 mapped against v3 of genome
- Bam file for DRR013239 mapped against v3 of genome
- Bam file for DRR013240 mapped against v3 of genome
- Bam file for DRR013241 mapped against v3 of genome
- Bam file for DRR013242 mapped against v3 of genome
- Bam file for DRR013243 mapped against v3 of genome
- Bam file for DRR013244 mapped against v3 of genome
- Bam file for DRR013245 mapped against v3 of genome
- Bam file for DRR013246 mapped against v3 of genome
- Bam file for DRR013247 mapped against v3 of genome
- Bam file for DRR013248 mapped against v3 of genome
- Bam file for DRR013249 mapped against v3 of genome
- Bam file for DRR013250 mapped against v3 of genome
- Bam file for DRR013251 mapped against v3 of genome
- Bam file for DRR013252 mapped against v3 of genome
- Bam file for DRR013253 mapped against v3 of genome
- Bam file for DRR013254 mapped against v3 of genome
- Bam file for DRR013255 mapped against v3 of genome
- Bam file for DRR013256 mapped against v3 of genome
- Bam file for DRR013257 mapped against v3 of genome
- Bam file for DRR013258 mapped against v3 of genome
- Bam file for DRR013259 mapped against v3 of genome
- Bam file for DRR013260 mapped against v3 of genome
- Bam file for DRR013261 mapped against v3 of genome
mRNA-seq reads used to in assembly of transcriptome and annotation using Maker
- Bam file for Adnexa mapped against v3 of genome using TopHat2
- Bam file for Caudal epididymus mapped against v3 of genome using TopHat2
- Bam file for Endo mapped against v3 of genome using TopHat2
- Bam file for Follicle Ovary mapped against v3 of genome using TopHat2
- Bam file for Gravid endometrium Endometrium Uterus 4432 mapped against v3 of genome using TopHat2
- Bam file for Gravid endometrium Endometrium Uterus NT mapped against v3 of genome using TopHat2
- Bam file for Heart mapped against v3 of genome using TopHat2
- Bam file for Liver mapped against v3 of genome using TopHat2
- Bam file for Lung mapped against v3 of genome using TopHat2
- Bam file for Mammary mapped against v3 of genome using TopHat2
- Bam file for md5sum.txt mapped against v3 of genome using TopHat2
- Bam file for Mid prostate mapped against v3 of genome using TopHat2
- Bam file for Non gravid endometrium Endometrium Uterus 4432 mapped against v3 of genome using TopHat2
- Bam file for Non gravid endometrium Endometrium Uterus NT mapped against v3 of genome using TopHat2
- Bam file for normalized 100x mapped against v3 of genome using TopHat2
- Bam file for Ovary with CL mapped against v3 of genome using TopHat2
- Bam file for Phallus male 3708 mapped against v3 of genome using TopHat2
- Bam file for Phallus male 3796 mapped against v3 of genome using TopHat2
- Bam file for Retroperitoneal white adipose tissue mapped against v3 of genome using TopHat2
- Bam file for Spleen mapped against v3 of genome using TopHat2
- Bam file for Testis mapped against v3 of genome using TopHat2
Small RNAs mapped against genome
- Bam file for brain miRNA GSM753561 mapped against v3 of genome
- Bam file for fibroblast miRNA GSM753562 mapped against v3 of genome
- Bam file for liver miRNA GSM753563 mapped against v3 of genome
- Bam file for ovary miRNA GSM753564 mapped against v3 of genome
- Bam file for pouchYoungDay125 crasiRNA GSM753559 mapped against v3 of genome
- Bam file for testis crasiRNA GSM753560 mapped against v3 of genome
- Bam file for testis miRNA GSM753565 mapped against v3 of genome
- Bam file for testis piRNA GSM753566 mapped against v3 of genome